Software and Data

Datasets

• 16S-rRNA amplicon dataset for bathypelagic prokaryotes from the Malaspina 2010 Expedition
  • Data: Github repository
  • Associated publications:
    • Guillem Salazar, Francisco M. Cornejo-Castillo, Encarna Borrull, Cristina Díez-Vives, Elena Lara, Dolors Vaqué, Jesús M. Arrieta, Carlos M. Duarte, Josep M. Gasol, Silvia G. Acinas. (2015) Particle-association lifestyle is a phylogenetically conserved trait in bathypelagic prokaryotes. Molecular Ecology 24 (22) 5692-5706)
    • Guillem Salazar, Francisco M Cornejo-Castillo, Verónica Benítez-Barrios, Eugenio Fraile-Nuez, X Antón Álvarez-Salgado, Carlos M Duarte, Josep M Gasol, Silvia G Acinas. (2015) Global diversity and biogeography of deep-sea pelagic prokaryotes. The ISME Journal 10 (3) 596-608
• Ocean Microbial Reference Gene Catalog (OM-RGC.v2) from the Tara Oceans Expedition
  • Data: Companion website and BioStudies repository
  • Associated publications:
    • Guillem Salazar, Lucas Paoli, et al. (2019) Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome. Cell 179 (5) 1068-1083.e21

Software

• mTAGs: taxonomic profiling using degenerate consensus reference sequences of ribosomal RNA genes. Github repository and Publication

• EcolUtils: Utilities for community ecology analysis. Github repository